Basic Information

IDDRAMP03595
SequenceATCYCRTGRCATRESLSGVCEISGRLYRLCCR
Length32
NameHuman defensin-5 (HD-5; Defensin, alpha 5; Human, mammals, animals)
SourceHomo sapiens (Human)
ActivityAntimicrobial, Antibacterial, Anti-Gram+, Anti-Gram-, Antifungal, Antiviral(SARS-CoV-2)
Pathogen[Ref.34206990]Virus:SARS-CoV-2:inhibition of infection in HEK293T-hACE2 cells(60% inhibition at 12.5 μg/mL (3.45 μM));SARS-CoV-2 variant P.1:inhibition of infection in HeLa-hACE2 cells(72% inbibition at 50 μg/mL);SARS-CoV-2 variant B.1.1.7:inhibition of infection in HeLa-hACE2 cells(32% inbibition at 50 μg/mL).##Gram-negative bacteria: Escherichia coli ATCC 8739 (vLD50=2.5±0.3 µg/ml), E. coli ATCC 25922 (vLD50=2.1±0.9 µg/ml), Enterobacter aerogenes ATCC 13048 (vLD50=5.5±0.5 µg/ml);##Gram-positive bacteria: Staphylococcus aureus ATCC 25923 (vLD50=6.3±0.5 µg/ml), S. aureus ATCC 29213 (vLD50=3.2±0.3 µg/ml), Bacillus cereus ATCC 10876 (vLD50<0.31 µg/ml).(Ref.2)##NOTE: vLD50, virtual lethal doses (vLDs), equivalent to conventional 50% lethal doses (LD50s).
Hemolytic Activity[Ref.26206286] It has 0% hemolysis at 100μM against human red blood cells.
Cytotoxicity[Ref.34206990]No cytotoxicity on HEK293T cells up to 50 μg/mL.
N-terminal ModificationFree
C-terminal ModificationFree
Linear/Cyclic/BranchedCyclic
Uniprot Q01523, A0JDY6, Q3KNV2
PDB 1ZMP resolved by X-ray.
3D View
PDB DownloadDownload PDB Predicted by Alphafold2
PubMed ID34206990, 12021776, 15616305, 26206286

Physicochemical Properties

Residues32
SequenceATCYCRTGRCATRESLSGVCEISGRLYRLCCR
Molecular Weight3588.176
Grand Average of Hydropathy-0.113
Isoelectric Point8.962
Charge at pH 7.43.458
Secondary StructureHelix: 0.219, Turn: 0.188, Sheet: 0.219
Instability Index13.788
Aromaticity0.062

Similar Structure Search

Candidates based on structure

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